Handling Relationships in MongoDB: Embedding vs Referencing

Published on December 15, 2025 | M.E.A.N Stack Development
WhatsApp Us

Handling Relationships in MongoDB: A Beginner's Guide to Embedding vs Referencing

If you're moving from traditional SQL databases to MongoDB, one of the first and most crucial design decisions you'll face is how to handle relationships between your data. Unlike the rigid, table-based structure of SQL, MongoDB's flexible document model offers powerful choices: embedding and referencing. Choosing the right approach is fundamental to your application's performance, scalability, and maintainability. This guide will break down these two core strategies for MongoDB relationships, covering one-to-one, one-to-many, and many-to-many patterns with practical examples. You'll learn not just the theory, but how to make smart decisions for your specific use case—a skill that's critical for any developer working with modern databases.

Key Takeaway

MongoDB doesn't have joins like SQL. Instead, you model relationships either by nesting related data directly inside a document (embedding) or by storing separate documents and linking them with an identifier (referencing). The best choice depends on your data's access patterns, growth rate, and query needs.

Why Document Design Matters in MongoDB

In MongoDB, schema design is intimately tied to how your application queries and updates data. A well-designed schema makes your queries fast and simple; a poor one can lead to complex application logic and slow performance. The core principle is: structure your data to match the ways your application will access it. This often means de-normalizing (duplicating) data for read speed, a shift in mindset from SQL normalization. Your goal is to minimize the number of queries needed to complete a common operation.

Embedding: Nesting Data for Performance

Embedding, or denormalization, involves placing related data directly inside a parent document as a sub-document or an array of sub-documents. This is MongoDB's most natural way to represent relationships.

When to Use Embedding

  • One-to-Few Relationships: Perfect for cases where related entities have a clear "containment" relationship with the parent (e.g., an address inside a user profile, comments on a blog post).
  • Data is Accessed Together: If you almost always need the related data whenever you fetch the parent, embedding provides it in a single read operation.
  • Atomic Updates Needed: MongoDB guarantees atomic operations on a single document. If you need to update parent and child data together transactionally, embedding is the way to go.

Practical Example: User with Embedded Address

Let's model a simple user profile with a primary address. In a manual testing scenario, you'd verify that fetching a user document returns the complete address data without a second query.


{
  "_id": ObjectId("507f1f77bcf86cd799439011"),
  "username": "jane_doe",
  "email": "jane@example.com",
  "primary_address": {
    "street": "123 Main St",
    "city": "Austin",
    "state": "TX",
    "zipcode": "73301"
  }
}
    

This design is efficient. One query retrieves the entire user entity. However, what if a user needs multiple addresses? This leads us to a common pattern.

Referencing: Linking Separate Documents

Referencing, or normalization, involves storing related data in separate documents and linking them using a stored reference, typically the `_id` field. The application then issues a second query to resolve the reference.

When to Use Referencing

  • Large Sub-documents or Arrays: Embedding can lead to very large documents, potentially exceeding the 16MB document size limit or causing performance issues on frequent updates.
  • Frequent, Independent Updates: If the child data is updated often on its own, embedding forces you to update the entire parent document.
  • Many-to-Many Relationships: This is a classic case for referencing, as data would be duplicated excessively if embedded.
  • Data is Shared: If the same child entity relates to many parents (e.g., an author of many books), referencing prevents data duplication and inconsistency.

Practical Example: Books and Authors (Referencing)

An author can write many books, and a book can have multiple authors (a many-to-many relationship). Embedding would be inefficient here.

Author Collection:


{
  "_id": ObjectId("aa1f1f77bcf86cd799439022"),
  "name": "James Clear",
  "nationality": "American"
}
    

Book Collection:


{
  "_id": ObjectId("bb2f2f88acf86cd799439033"),
  "title": "Atomic Habits",
  "isbn": "9780735211292",
  "author_ids": [
    ObjectId("aa1f1f77bcf86cd799439022") // Reference to James Clear
  ]
}
    

To get a book with its author details, you perform two queries: first find the book, then find the author(s) by their `_id`. MongoDB's `$lookup` aggregation operator can perform this "join" on the database server, but it's more computationally expensive than a single document read.

From Theory to Practice

Understanding these concepts is one thing; applying them to build a real, scalable application is another. Many courses stop at theory. At LeadWithSkills, our Full Stack Development course forces you to make these design decisions in live projects, dealing with real data growth and query performance issues—the exact challenges you'll face in a developer role.

Comparing Query Efficiency: Embedding vs Referencing

Query efficiency is often the deciding factor. Let's analyze common operations:

  • Read Speed: Embedding wins. One database round-trip fetches all related data. Referencing requires at least two queries or a slower aggregation (`$lookup`).
  • Write Speed: It's nuanced. Updating a small embedded sub-document is fast and atomic. However, updating a large embedded array can be slow and may fragment the document on disk. Updating a referenced document is isolated and fast.
  • Data Consistency: Embedding ensures immediate consistency within the document. With referencing, you must manage consistency in your application code if related documents are updated separately.
  • Scalability: For massively large or frequently updated sub-elements, referencing scales better by avoiding bloated parent documents.

Schema Design Patterns for Common Relationships

One-to-One: Prefer Embedding

Example: User ↔ Driver's License. The license is intrinsically tied to one user. Embedding is almost always the right choice for simplicity and performance.

One-to-Many: The Critical Decision Point

Example: Blog Post ↔ Comments. This is the most common dilemma.
Strategy A (Embedding): Embed an array of comment sub-documents if comments are few, always displayed with the post, and have a bounded growth.
Strategy B (Referencing): Store comments in a separate collection if they are numerous, paginated, or updated independently. This is a key decision you'd prototype and test in a real project environment.

Many-to-Many: Prefer Referencing

Example: Students ↔ Courses. A student enrolls in many courses, and a course has many students. The standard pattern is to store references (arrays of `_id`s) in one or both documents.
Student Document: Has an array of `course_ids`.
Course Document: Has an array of `student_ids`.
Your choice of where to place the array depends on your primary query path. Do you more often find a student and list their courses, or find a course and list its students?

Hybrid and Advanced Patterns

Real-world document design often uses hybrid approaches. A common pattern is subset embedding with referencing. For example, in an e-commerce system, an `Order` document might embed a subset of the `Product` data (name, price at time of sale) for performance, while also storing a reference to the full product document for linking to current details. This balances read efficiency with data integrity.

Mastering these nuanced patterns requires building systems that handle real data. Our project-based Web Designing and Development courses integrate backend MongoDB design with frontend frameworks, teaching you to think about data flow across the entire stack.

Actionable Checklist for Your Next Project

When designing your MongoDB schema, ask these questions:

  1. What is the cardinality of the relationship? (One-to-one, one-to-many, many-to-many)
  2. How will the data be queried most often? (Favor the structure that supports the most frequent query)
  3. What is the growth pattern of the related data? (Small and bounded vs. large and unbounded)
  4. How often is the related data updated independently?
  5. Do you need atomicity across this data?
  6. Is the data duplicated? If so, how will you handle updates to the "source of truth"?

Start by embedding for simplicity and performance, and shift to referencing only when embedding causes clear issues (document size, update complexity, duplication).

FAQs on MongoDB Relationships

"I'm coming from MySQL. Is referencing in MongoDB just like using a foreign key?"
Conceptually, yes—it's a link between documents. However, crucially, MongoDB does not enforce referential integrity at the database level. If you delete a referenced document, the "dangling" reference will remain. You must handle this logic in your application code.
"When embedding, what's the actual limit? I heard about a 16MB document size."
That's correct. A single MongoDB document cannot exceed 16 megabytes. This is the hard limit that prevents you from embedding, say, thousands of large sub-documents. Always consider growth when choosing to embed an array.
"Which is better for one-to-many: embedding an array or referencing?"
There's no universal "better." For a "few" (dozens, maybe hundreds) where you always need them, embed. For "many" (thousands, unbounded) or if you paginate through them, use referencing. Benchmark your specific use case.
"How do I query embedded data? It seems complicated."
MongoDB's query language is powerful for this. Use dot notation (`"primary_address.city": "Austin"`) to query fields within sub-documents. Use array operators like `$elemMatch` to query inside arrays. It's a key skill to practice.
"Can I change my mind later? Is it hard to switch from embedding to referencing?"
It involves a data migration script. While possible, it can be complex for large datasets. This is why thoughtful initial design, based on projected access patterns, is so important. Prototyping with real-ish data early on is highly recommended.
"For many-to-many, should I put the reference array on one side or both?"
It depends on your query needs. If you mostly find a Student and list their Courses, put `course_ids` in the Student document. If you need both queries equally, you might denormalize and store the array in both, but then you must update two places when a relationship changes—a trade-off for read speed.
"What's the performance cost of using `$lookup` for referencing?"
`$lookup` performs a join-like operation internally. It's significantly slower than reading a single embedded document and more resource-intensive than two simple sequential queries. Use it judiciously, especially on large collections.
"I'm building a social media app. Should I embed 'likes' in a post document or reference them?"
Likes are a classic unbounded, high-growth array. Referencing is safer. Embedding could blow up the post document size if a post goes viral. Store likes in a separate collection with references to `user_id` and `post_id`. This is exactly the type of real-world design problem tackled in our Angular Training course, where you build dynamic frontends that interact with such optimized backends.

Conclusion: Design for Your Application

Mastering MongoDB relationships through embedding and referencing is less about memorizing rules and more about developing a mindset. You must deeply understand your application's data access patterns. Start with the principle of embedding for performance, but know when to pivot to referencing for scalability. The best way to internalize these concepts is to build, observe, and iterate. Move beyond theoretical examples and grapple with real datasets that grow and change. This practical, decision-focused experience is what separates those who simply know MongoDB from those who can wield it effectively to build robust applications.

Ready to Master Full Stack Development Journey?

Transform your career with our comprehensive full stack development courses. Learn from industry experts with live 1:1 mentorship.